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Turn any agent into a life science expert with NVIDIA BioNeMo skills.
Claude Skills are markdown + scripts loaded into Claude Code; scanned with the same pipeline.
We found this by crawling public sources and nobody has attested to it. That is how most of the registry gets here, and it is not a mark against the artifact — it only means no authenticated act of publication is on record. An artifact can be the vendor's own and still appear here.
13 critical findings reported by cisco-skill-scanner, agent-audit-kit. The composite score alone does not reflect this — read the per-scanner reports below.
Claude Skills install to a single target, no runtime picker.
nerlo install -- bionemo-agent-toolkit
Manual alternative: copy the skill folder into ~/.claude/skills/ so Claude Code loads it on next launch.
cp -r -- bionemo-agent-toolkit ~/.claude/skills/
Install respects the composite badge: Clean proceeds, Caution prompts for confirmation, and Flagged is refused. Write operations require an API token.
4 of 11 scanners examined this package. The rest do not apply to it — language, ecosystem and packaging decide which analyzers can say anything, and a scanner that cannot examine an artifact reports nothing rather than passing it.
v2.0.11
308 findings · 41.6s
v0.3.74
48 findings · 12.0s
v0.1.0
2 findings · 8.4s
v0.1.0
5 findings · 8.4s
v1.4.0
None of the entry points this scanner reads were found in this artifact. What each scanner covers
0 findings · 0.2s
vv0.3.2
No Go packages were found in this artifact. What each scanner covers
0 findings · 0.1s
v0.1.0
This scanner found nothing in this artifact that it assesses. What each scanner covers
0 findings · 1.7s
No report in this scan: govulncheck, osv-scanner, trivy, trivy_image.
1 scan on record. Every scan's full results are retained immutably for 24 months.
| Completed | Composite | Change | Scanners | Status |
|---|---|---|---|---|
| Aug 20, 2026 | Scan Halted | — | agentshield ·n/a: not applicablecisco-skill-scanner: completeagent-audit-kit: completenerlo-behavioral: completenerlo-install-instruction: completecapslock ·n/a: not applicablenerlo-multi-source ·n/a: not applicable | rejected |
Findings in files this artifact installs stand as reported; a model re-read the rest and said which ones it believes are false positives. This is a second opinion published beside the evidence, not a correction to it: the per-scanner reports above are unchanged, every dismissed finding is still listed there at its original severity, and the score and the Flagged badge are computed from those raw severities alone. Nothing below moved them.
Out of 363 findings across every scanner that examined this package. None of the 13 findings rated critical by their scanner were dismissed.
Not reviewed is not the same as clean. Those 147 findings stand exactly as their scanners reported them, at full severity, as they would have without this review.
Two keys had to turn. The model had to name a reason from a fixed list of six, and a deterministic check of ours — over which files this artifact actually installs — had to independently agree. Anything it could not corroborate is in “not reviewed” above, at full severity.
2 CI or editor configuration — The match is in build, CI or editor configuration, confirmed by our own check to be outside the installed artifact.
Rules: AAK-GHA-IMMUTABLE-001 · Files: .github/workflows/sync-skills.yml, .github/workflows/request-nvskills-ci.yml · reported by agent-audit-kit
2 Documentation or example — The match is in documentation or sample code, confirmed by our own check to be outside the installed artifact.
Rules: SOCIAL_ENG_VAGUE_DESCRIPTION, MANIFEST_MISSING_LICENSE · Files: /repo/docs/SKILL.md · reported by cisco-skill-scanner
The model could have called any of these a false positive and did not.
96 DATA_EXFIL_NETWORK_REQUESTS
Files: /repo/workflows/generative-protein-binder-design/complexa-binder-design/scripts/boltz2_refold.py, /repo/workflows/generative-protein-binder-design/complexa-binder-design/scripts/fetch_target_msa_colabfold.py, /repo/workflows/generative-protein-binder-design/complexa-binder-design/scripts/pdb_interface.py and 11 more · reported by cisco-skill-scanner
83 MANIFEST_MISSING_LICENSE
Files: /repo/plugins/bionemo-agent-toolkit/skills/complexa-design/SKILL.md, /repo/plugins/bionemo-agent-toolkit/skills/complexa-setup/SKILL.md, /repo/plugins/bionemo-agent-toolkit/skills/complexa-sweep/SKILL.md and 80 more · reported by cisco-skill-scanner
10 HIDDEN_DATA_FILE
Files: /repo/library-skills/parabricks/.skillsource.json, /repo/library-skills/genomics-workflow-acceleration/.skillsource.json, /repo/library-skills/cuequivariance/.skillsource.json and 3 more · reported by cisco-skill-scanner
9 PATH_TRAVERSAL_OPEN
Files: /repo/workflows/generative-protein-binder-design/complexa-binder-design/vendor/science-skills/alphafold_database_fetch_and_analyze/scripts/fetch_structure.py, /repo/plugins/bionemo-agent-toolkit/skills/complexa-binder-design/vendor/science-skills/alphafold_database_fetch_and_analyze/scripts/fetch_structure.py · reported by cisco-skill-scanner
6
147 The model called these false positives and our own check did not agree, so the dismissal was refused.
Rules: AAK-SKILL-003, AAK-IPI-WILD-CORPUS-001, TOOL_ABUSE_UNDECLARED_NETWORK and 9 more · Files: plugins/bionemo-agent-toolkit/skills/proteinmpnn-nim/SKILL.md, plugins/bionemo-agent-toolkit/skills/msa-search-nim/SKILL.md, nim-skills/proteinmpnn-nim/SKILL.md and 131 more · reported by agent-audit-kit, cisco-skill-scanner, nerlo-install-instruction
Critical path traversal and data handling risks.
The artifact exhibits critical path traversal vulnerabilities in `fetch_structure.py`, enabling access to arbitrary file system locations. Critical findings from the `bearer` scanner in scripts like `write_manifest.py` and `complexa_design.py` suggest insecure data handling. High severity findings also indicate potential network egress of secrets, as identified by `nerlo-behavioral` rules. These capabilities present risks related to unauthorized file system manipulation and sensitive information exposure.
Concern level assessed by the review: Critical. This is the review's scale, not the registry badge.
Reviewed by gemini-2.5-flash. The model sees the findings, not your code, and cannot change a score.
Files: /repo/plugins/bionemo-agent-toolkit/skills/parabricks/scripts/check_parabricks_runtime.py, /repo/library-skills/parabricks/scripts/check_parabricks_runtime.py, /repo/workflows/generative-protein-binder-design/complexa-binder-design/vendor/science-skills/uniprot_database/scripts/uniprot_tools.py and 1 more · reported by cisco-skill-scanner
2 AAK-MARKETPLACE-001
Files: .claude-plugin/marketplace.json, .agents/plugins/marketplace.json · reported by agent-audit-kit
2 EXCESSIVE_FILE_COUNT
Files: /repo/., /repo/nim-skills/. · reported by cisco-skill-scanner
2 MANIFEST_INVALID_NAME
Files: /repo/compliance.d/SKILL.md, /repo/compliance.d/library-skills/nvMolKit/SKILL.md · reported by cisco-skill-scanner
2 opt.nerlo-rules.nerlo-py-secret-to-network-egress
Files: /repo/plugins/bionemo-agent-toolkit/skills/complexa-binder-design/scripts/validate_binders.py, /repo/workflows/generative-protein-binder-design/complexa-binder-design/scripts/validate_binders.py · reported by nerlo-behavioral
Showing 18 of 18; the rest are in the per-scanner reports above.